PING-Mapper

Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat

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PING-Mapper transforms recreation-grade sonar systems into scientific data collectors, allowing researchers and citizens alike to reproducibly map their aquatic system with minimal expertise in data processing.

Overview

Key Functionality

  • Decode Humminbird® (tested on 1197, 1198, 1199, Helix, Solix, Onix). If it doesn’t work for your Humminbird® recording, submit an Issue. For more information on Humminbird® recording file formats, read the docs.

  • Export all metadata from .DAT and .SON files to .CSV.

  • Automatically detect depth (i.e. Zheng et al. 2021) and shadows in side scan channels .

  • Correct sonar backscatter with Empiracle Gain Normalization.

  • Export un-rectified sonar tiles with water column present (WCP) AND/OR export un-rectified sonograms with water column removed (WCR) using Humminbird depth estimates OR automated depth detections.

  • Export speed corrected un-rectified sonograms.

  • Smooth and interpolate GPS track points.

  • Export georectified WCP (spatially inaccurate due to presence of water column) AND/OR WCR sonar imagery for use in GIS w/wo shadows removed.

  • Mosaic georectified sonar imagery.

  • Automatically segment and classify substrate patches.

More information on PING-Mapper exports can be found here.

Compatible Humminbird® Systems

PING-Mapper is currently compatible with Humminbird® side imaging sonar systems. The software has been designed to work with any model, but has been specifically tested with the following models:

  • 998
  • 1198
  • 1199
  • Helix
  • Solix
  • Onix

If PING-Mapper doesn’t work for your Humminbird® recording, submit an Issue.

Examples

PING-Mapper is designed to decode sonar recordings from a Humminbird® like this:

Video made with HumViewer

Export ping attributes from each sonar channel including sonar depth, latitude, longitude, vessel speed & heading, etc., to file for further analysis:

And export georectified mosaics of the sonar imagery and automatically generate substrate maps:

Find out more!

There are several ways you can find out more about PING-Mapper. The first of which is this website! You can also check out the manuscripts and Zenodo archives below. If you use PING-Mapper for your work, please cite the journal articles below.

PING-Mapper v2.0.0

The second version of PING-Mapper is available now, including automated substrate mapping. Check the release notes for more information.

Journal Article

Bodine, C. S., Buscombe, D., & Hocking, T. D. (2024). Automated river substrate mapping from sonar imagery with machine learning. Journal of Geophysical Research: Machine Learning and Computation, 1, e2024JH000135. https://doi.org/10.1029/2024JH000135

Preprint

Earth ArXiv Preprint DOI

Code

DOI

Segmentation models

DOI

Segmentation model training datasets

DOI

PING-Mapper v1.0.0

An overview of PING-Mapper v1.0.0 functionality and justification are published in AGU’s Earth and Space Science scientific journal.

Journal Article

Bodine, C. S., Buscombe, D., Best, R. J., Redner, J. A., & Kaeser, A. J. (2022). PING-Mapper: Open-source software for automated benthic imaging and mapping using recreation-grade sonar. Earth and Space Science, 9, e2022EA002469. https://doi.org/10.1029/2022EA002469

Preprint

Earth ArXiv Preprint DOI

Code

DOI

Ready to get started?

Follow the installation and testing instructions to Get Started!

Acknowledgements

This study was made possible by a partnership between the U.S. Fish and Wildlife Service and Northern Arizona University. Funding for this work was provided by the Open Ocean Trustee Implementation Group to restore natural resources injured by the 2010 Deepwater Horizon oil spill in the Gulf of Mexico. The contents of this website are those of the authors and do not necessarily represent the views of the U.S. Fish and Wildlife Service or Northern Arizona University.

Primary Developer: Cameron S. Bodine

Co-Developer: Daniel Buscombe

Thanks to project collaborators Adam Kaeser (USFWS), Channing St. Aubin (USFWS), Mike Andres (USM), Kasea Price (USM), Alyssa Pagel (USM), Eric Haffey (USM), and Katherine Wright (USM).

A special thanks to advocates and early-adoptors including, but not limited to, Jennylyn Redner, Adrian Pinchbeck, Art Trembanis, Dan Carlson, Alan Ryon, Mirko Denecke, Dan Haught, Dan Hamill, Mark Lundine, Elizabeth Greenheck, Hendra Kurnia Febriawan, Bryan Bozeman, Paul Grams, Matt Kaplinski, Jess Kozarek, Chris Milliren, Brett Connell and James Parham.

Cameron wishes to thank his PhD dissertation committee: Toby Hocking, Co-Chair; advisor Dan Buscombe, Co-Chair; Rebecca Best; and Adam Kaeser.

PING-Mapper is part of the Doodleverse!

153729377-e16d0679-ca0d-4d0d-a9f9-90306ba2f871

The Doodleverse is an opinionated collection of Python packages designed for geoscientific image segmentation. Find out more on GitHub.

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This study was made possible by a partnership between the U.S. Fish and Wildlife Service and Northern Arizona University. Funding for this work was provided by the Open Ocean Trustee Implementation Group to restore natural resources injured by the 2010 Deepwater Horizon oil spill in the Gulf of Mexico. The contents of this website are those of the authors and do not necessarily represent the views of the U.S. Fish and Wildlife Service or Northern Arizona University. Copyright © 2024 Cameron Bodine.